Search details
1.
DrForna: visualization of cotranscriptional folding.
Bioinformatics
; 39(9)2023 09 02.
Article
in English
| MEDLINE | ID: mdl-37682108
2.
StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps.
Bioinformatics
; 38(7): 2049-2051, 2022 03 28.
Article
in English
| MEDLINE | ID: mdl-35020798
3.
RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets.
Nucleic Acids Res
; 45(8): e60, 2017 05 05.
Article
in English
| MEDLINE | ID: mdl-28108657
4.
Predicting RNA 3D structure using a coarse-grain helix-centered model.
RNA
; 21(6): 1110-21, 2015 Jun.
Article
in English
| MEDLINE | ID: mdl-25904133
5.
Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams.
Bioinformatics
; 31(20): 3377-9, 2015 Oct 15.
Article
in English
| MEDLINE | ID: mdl-26099263
6.
Adaptable probabilistic mapping of short reads using position specific scoring matrices.
BMC Bioinformatics
; 15: 100, 2014 Apr 09.
Article
in English
| MEDLINE | ID: mdl-24717095
7.
The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.
Nat Commun
; 13(1): 2365, 2022 05 02.
Article
in English
| MEDLINE | ID: mdl-35501320
8.
Complete genomic and epigenetic maps of human centromeres.
Science
; 376(6588): eabl4178, 2022 04.
Article
in English
| MEDLINE | ID: mdl-35357911
9.
The complete sequence of a human genome.
Science
; 376(6588): 44-53, 2022 04.
Article
in English
| MEDLINE | ID: mdl-35357919
10.
Pattern-Driven Navigation in 2D Multiscale Visualizations with Scalable Insets.
IEEE Trans Vis Comput Graph
; 26(1): 611-621, 2020 01.
Article
in English
| MEDLINE | ID: mdl-31442989
11.
HiNT: a computational method for detecting copy number variations and translocations from Hi-C data.
Genome Biol
; 21(1): 73, 2020 03 23.
Article
in English
| MEDLINE | ID: mdl-32293513
12.
3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.
F1000Res
; 82019.
Article
in English
| MEDLINE | ID: mdl-31069053
13.
HiPiler: Visual Exploration of Large Genome Interaction Matrices with Interactive Small Multiples.
IEEE Trans Vis Comput Graph
; 24(1): 522-531, 2018 01.
Article
in English
| MEDLINE | ID: mdl-28866592
14.
HiGlass: web-based visual exploration and analysis of genome interaction maps.
Genome Biol
; 19(1): 125, 2018 08 24.
Article
in English
| MEDLINE | ID: mdl-30143029
15.
The dynseq browser track shows context-specific features at nucleotide resolution.
Nat Genet
; 54(11): 1581-1583, 2022 11.
Article
in English
| MEDLINE | ID: mdl-36241719
16.
Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.
Nat Commun
; 13(1): 6561, 2022 Nov 02.
Article
in English
| MEDLINE | ID: mdl-36323678
17.
Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes.
PLoS One
; 8(7): e68484, 2013.
Article
in English
| MEDLINE | ID: mdl-23894309
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